Selected articles:

J. of Biomedical Optics, 22(11), 110503 (2017). doi:10.1117/16 November 2017.
High-refractive index of acrylate embedding resin clarifies mouse brain tissue.
Zhou H, Xiong Y, Wang Y, Wang X, Li P, Gang Y, Liu X, Zeng S.

Gastroenterology. 2017 Oct;153(4):898-900. doi: 10.1053/j.gastro.2017.07.022. Epub 2017 Sep 4.
Three-Dimensional Cross-Sectional Light-Sheet Microscopy Imaging of the Inflamed Mouse Gut.
Zundler S, Klingberg A, Schillinger D, Fischer S, Neufert C, Atreya I, Gunzer M, Neurath MF.

Sci Rep. 2017 Aug 24;7(1):9269.
CUBIC pathology: three-dimensional imaging for pathological diagnosis.  
Nojima S, Susaki EA, Yoshida K, Takemoto H, Tsujimura N, Iijima S, Takachi K, Nakahara Y, Tahara S, Ohshima K, Kurashige M, Hori Y, Wada N, Ikeda JI, Kumanogoh A, Morii E, Ueda HR. 

JCI Insight. 2017 Aug 17;2(16).
VIPAR, a quantitative approach to 3D histopathology applied to lymphatic malformations.
Hägerling R, Drees D, Scherzinger A, Dierkes C, Martin-Almedina S, Butz S, Gordon K, Schäfers M, Hinrichs K, Ostergaard P, Vestweber D, Goerge T, Mansour S, Jiang X, Mortimer PS, Kiefer F.

Am J Pathol. 2017 Aug 17. pii: S0002-9440(17)30415-7. doi:
Deletion of Endothelial TGF-β Signaling Leads to Choroidal Neovascularization.
Schlecht A, Leimbeck SV, Jägle H, Feuchtinger A, Tamm ER, Braunger BM.

Cell. 2017 Mar 23;169(1):161-173.e12. doi: 10.1016/j.cell.2017.03.008.
Tridimensional Visualization and Analysis of Early Human Development.
Belle M, Godefroy D, Couly G, Malone SA, Collier F, Giacobini P, Chédotal A.New Link

Sci Rep. 2016 Oct 7;6:34885. doi: 10.1038/srep34885
Intra-islet lesions and lobular variations in β-cell mass expansion in ob/ob mice revealed by 3D imaging of intact pancreas.
Parween S, Kostromina E, Nord C, Eriksson M, Lindström P, Ahlgren U.

Nat Methods. 2016 Aug 22. doi: 10.1038/nmeth.3964. PubMed PMID: 27548807
Shrinkage-mediated imaging of entire organs and organisms using uDISCO.
Pan C, Cai R, Quacquarelli FP, Ghasemigharagoz A, Lourbopoulos A, Matryba P, Plesnila N, Dichgans M, Hellal F, Ertürk A.

J Am Soc Nephrol. 2016 Aug 3. pii: ASN.2016020232. [Epub ahead of print] PubMed PMID: 27487796.
Fully Automated Evaluation of Total Glomerular Number and Capillary Tuft Size in Nephritic Kidneys Using Lightsheet Microscopy.
Klingberg A, Hasenberg A, Ludwig-Portugall I, Medyukhina A, Männ L, Brenzel A, Engel DR, Figge MT, Kurts C, Gunzer M.

PLoS One. 2016 Jul 28;11(7):e0159463. doi: 10.1371/journal.pone.0159463.eCollection 2016.
3D Visualization of the Temporal and Spatial Spread of Tau Pathology Reveals Extensive Sites of Tau Accumulation Associated with Neuronal Loss and Recognition Memory Deficit in Aged Tau Transgenic Mice.
Fu H, Hussaini SA, Wegmann S, Profaci C, Daniels JD, Herman M, Emrani S, Figueroa HY, Hyman BT, Davies P, Duff KE.

Cell Rep. 2016 Jul 26;16(4):1138-52. doi: 10.1016/j.celrep.2016.06.060.
Three-Dimensional Study of Alzheimer's Disease Hallmarks Using the iDISCO Clearing Method.
Liebmann T, Renier N, Bettayeb K, Greengard P, Tessier-Lavigne M, Flajolet M.

Hear Res. 2016 Jul 1. pii: S0378-5955(16)30040-5. doi: 10.1016/j.heares.2016.06.007.
Endolymph movement visualized with light sheet fluorescence microscopy in an acute hydrops model.
Brown DJ, Pastras C, Curthoys IS, Southwell CS, Van Roon L.

Sci Rep. 2016 Jun 20;6:28272. doi: 10.1038/srep28272.
Ultramicroscopy as a novel tool to unravel the tropism of AAV gene therapy vectors in the brain.
Alves S, Bode J, Bemelmans AP, von Kalle C, Cartier N, Tews B.

Cell. 2016 Jun 16;165(7):1789-802. doi: 10.1016/j.cell.2016.05.007. Epub 2016 May 26.
Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Renier N, Adams EL, Kirst C, Wu Z, Azevedo R, Kohl J, Autry AE, Kadiri L, Umadevi Venkataraju K, Zhou Y, Wang VX, Tang CY, Olsen O, Dulac C, Osten P, Tessier-Lavigne M.

Cell. 2016 Jun 16;165(7):1776-88. doi: 10.1016/j.cell.2016.05.010. Epub 2016 May 26.
Wiring and Molecular Features of Prefrontal Ensembles Representing Distinct Experiences.
Ye L, Allen WE, Thompson KR, Tian Q, Hsueh B, Ramakrishnan C, Wang AC, Jennings JH, Adhikari A, Halpern CH, Witten IB, Barth AL, Luo L, McNab JA, Deisseroth K 

J Neurosci Methods. 2016 Apr 1;263:57-67. doi: 10.1016/j.jneumeth.2016.01.025. Epub 2016 Feb 6.
A flow cytometric approach to analyzing mature and progenitor endothelial cells following traumatic brain injury.
Assis-Nascimento P, Umland O, Cepero ML, Liebl DJ  

Elife. 2016 Feb 2;5. pii: e11712. doi: 10.7554/eLife.11712.
Correlated magnetic resonance imaging and ultramicroscopy (MR-UM) is a tool kit to assess the dynamics of glioma angiogenesis.
Breckwoldt MO, Bode J, Kurz FT, Hoffmann A, Ochs K, Ott M, Deumelandt K, Krüwel T, Schwarz D, Fischer M, Helluy X, Milford D, Kirschbaum K, Solecki G, Chiblak S, Abdollahi A, Winkler F, Wick W, Platten M, Heiland S, Bendszus M, Tews B.